Basic Information
Locus ID:
populus_peu36694
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 18032459 | 18034839 | - | populus_peu36694 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 34,003.53 Da | 35.27 | 82.43 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 40 | 233 | 7.66802E-57 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 42 | 261 | 7.2E-34 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 17 | 282 | 4.32E-60 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 13 | 309 | 5.4E-85 | IPR008949 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 93 | 109 | - | IPR033749 |
| Coils | Coil | Coil | 264 | 284 | - | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 44 | 283 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38460.1 | geranylgeranyl reductase. | 0 |
| RefSeq | XP_011045566.1 | PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Populus euphratica] | 0 |
| Q39108 | Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGR PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2XZ05 | Geranylgeranyl diphosphate synthase OS=Populus deltoides OX=3696 GN=H0E87_017107 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology