Basic Information
Locus ID:
populus_peu36689
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Hippocampus abundant
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 17984649 | 17996182 | + | populus_peu36689 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 47,561.79 Da | 44.28 | 117.69 | 0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 10 | 423 | 3.54218E-50 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 10 | 383 | 3.5E-28 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 8 | 425 | 1.96E-36 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 5 | 429 | 1.0E-39 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 6 | 429 | 12.185678 | IPR020846 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 56 | 72 | 2.6E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 332 | 352 | 2.6E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 307 | 328 | 2.6E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 367 | 390 | 2.6E-5 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_011045660.1 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Populus euphratica] | 0 |
| Q5SR56 | Hippocampus abundant transcript-like protein 1 OS=Homo sapiens OX=9606 GN=MFSD14B PE=1 SV=3 | 0 | |
| TrEMBL | B9HR21 | MFS domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G138900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology