Basic Information
Locus ID:
populus_peu36650
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 17770504 | 17773870 | - | populus_peu36650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 46,885.45 Da | 33.02 | 82.30 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 215 | 251 | 0.14 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 17 | 90 | 9.9E-24 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 256 | 294 | 0.0026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 301 | 338 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 359 | 394 | 7.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 169 | 202 | 0.16 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 142 | 399 | 5.72E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 414 | 8.1E-129 | IPR015943 |
| SMART | SM00320 | WD40_4 | 254 | 294 | 6.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 298 | 338 | 9.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 211 | 251 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 355 | 395 | 0.007 | IPR001680 |
| SMART | SM00320 | WD40_4 | 162 | 202 | 3.6E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 305 | 340 | 13.181907 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 261 | 296 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 169 | 204 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 169 | 204 | 9.572873 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 218 | 260 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 362 | 396 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 305 | 340 | 10.943775 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 325 | 339 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 189 | 203 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 189 | 203 | 7.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 325 | 339 | 7.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 281 | 295 | 7.2E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35050.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_011046141.1 | PREDICTED: WD-40 repeat-containing protein MSI2-like [Populus euphratica] | 0 |
| O22469 | WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana OX=3702 GN=MSI3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2K1Z7F0 | CAF1C_H4-bd domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G135100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology