Basic Information
Locus ID:
populus_peu36642
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 17725780 | 17728345 | + | populus_peu36642 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 30,570.41 Da | 36.06 | 90.40 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 2 | 274 | 1.6E-70 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 2 | 267 | 4.32E-67 | IPR035983 |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 11 | 105 | 1.2E-17 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 146 | 272 | 1.1E-33 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 2 | 140 | 1.2E-17 | - |
| SMART | SM00119 | hect_3 | 1 | 274 | 7.4E-23 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1 | 274 | 48.600483 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 233 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_011046281.1 | PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Populus euphratica] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | B9HR64 | HECT-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_009G134300 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology