Basic Information
Locus ID:
populus_peu36319
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 15491321 | 15493643 | - | populus_peu36319 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 41,973.15 Da | 49.89 | 89.58 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16702 | RING_CH-C4HC3_MARCH6 | 63 | 112 | 1.0169E-30 | - |
| Pfam | PF12906 | RING-variant domain | 64 | 110 | 3.5E-16 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 58 | 115 | 3.22E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 122 | 4.6E-24 | IPR013083 |
| SMART | SM00744 | ringv_2 | 63 | 111 | 6.5E-25 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 64 | 111 | 8.638745 | IPR001841 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 56 | 117 | 24.055962 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| Coils | Coil | Coil | 281 | 301 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34100.2 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011000817.1 | PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Populus euphratica] | 0 |
| F4JKK0 | Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana OX=3702 GN=SUD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1Z5M3 | E3 ubiquitin ligase SUD1 OS=Populus trichocarpa OX=3694 GN=POPTR_009G099400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28661 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl60961 |
| Salicaceae | Populus euphratica | 1 | populus_peu36319 |