Basic Information
Locus ID:
populus_peu36029
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 13428544 | 13440929 | + | populus_peu36029 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 97,050.80 Da | 55.53 | 76.80 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 22 | 121 | 9.18008E-12 | - |
| CDD | cd00159 | RhoGAP | 182 | 319 | 1.20134E-33 | - |
| Pfam | PF00620 | RhoGAP domain | 182 | 326 | 1.4E-30 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 620 | 701 | 3.1E-22 | IPR025757 |
| Pfam | PF00169 | PH domain | 21 | 125 | 3.4E-12 | IPR001849 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 182 | 375 | 1.14E-33 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 16 | 135 | 1.21E-17 | - |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 150 | 375 | 6.4E-41 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 10 | 127 | 9.4E-17 | IPR011993 |
| SMART | SM00324 | RhoGAP_3 | 179 | 370 | 6.0E-28 | IPR000198 |
| SMART | SM00233 | PH_update | 20 | 128 | 3.2E-15 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 173 | 373 | 29.522007 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 19 | 126 | 15.2991 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 796 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 796 | - | - |
| Coils | Coil | Coil | 831 | 858 | - | - |
| Coils | Coil | Coil | 610 | 644 | - | - |
| Coils | Coil | Coil | 670 | 697 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_011009114.1 | PREDICTED: rho GTPase-activating protein 7-like isoform X1 [Populus euphratica] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U5PX66 | Rho GTPase-activating protein 7-like isoform X1 OS=Populus alba OX=43335 GN=D5086_0000169260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology