Basic Information
Locus ID:
populus_peu35880
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 12233330 | 12241304 | - | populus_peu35880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 74,041.60 Da | 32.79 | 122.76 | 0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13136 | MATE_DinF_like | 37 | 512 | 1.466E-92 | IPR044644 |
| Pfam | PF01535 | PPR repeat | 625 | 651 | 2.7E-5 | IPR002885 |
| Pfam | PF01554 | MatE | 166 | 258 | 1.3E-11 | IPR002528 |
| Pfam | PF01554 | MatE | 317 | 444 | 7.4E-11 | IPR002528 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 545 | 676 | 1.1E-5 | IPR011990 |
| TIGRFAM | TIGR00797 | matE: MATE efflux family protein | 44 | 492 | 4.2E-115 | IPR002528 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 625 | 652 | 1.2E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 622 | 652 | 8.999285 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 127 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51340.2 | MATE efflux family protein. | 0 |
| RefSeq | XP_034896514.1 | protein DETOXIFICATION 42 [Populus alba] | 0 |
| Q9SYD6 | Protein DETOXIFICATION 42 OS=Arabidopsis thaliana OX=3702 GN=DTX42 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7Z2P7 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_034214 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology