Basic Information
Locus ID:
populus_peu35657
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 10350371 | 10353258 | - | populus_peu35657 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 32,554.75 Da | 44.98 | 99.49 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 260 | 284 | 7.3E-7 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 258 | 284 | 1.2E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 254 | 289 | 2.4E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 9 | 121 | 2.4E-14 | IPR036537 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 259 | 292 | 13.986818 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 256 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_011042684.1 | PREDICTED: U-box domain-containing protein 13-like [Populus euphratica] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | B9HPI5 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_009G029600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology