Basic Information
Locus ID:
populus_peu35523
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 8555297 | 8556911 | + | populus_peu35523 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 46,595.30 Da | 47.39 | 108.00 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 54 | 1.20609E-18 | - |
| Pfam | PF04564 | U-box domain | 6 | 78 | 1.4E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 101 | 388 | 4.67E-14 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 85 | 1.41E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 82 | 8.7E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 96 | 389 | 2.6E-14 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 75 | 5.3E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 82 | 36.720268 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_011008842.1 | PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Populus euphratica] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | B9HQ77 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_009G016100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology