Basic Information
Locus ID:
populus_peu35493
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 7667521 | 7672386 | + | populus_peu35493 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 56,990.88 Da | 56.10 | 86.92 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 267 | 315 | 8.67903E-15 | - |
| Pfam | PF12906 | RING-variant domain | 267 | 314 | 2.0E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 263 | 318 | 1.55E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 253 | 322 | 6.5E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 266 | 315 | 7.6E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 259 | 321 | 18.867231 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 519 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011044365.1 | PREDICTED: uncharacterized protein LOC105139582 isoform X2 [Populus euphratica] | 0 |
| TrEMBL | A0A8X8CQD3 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_032519 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology