Basic Information
Locus ID:
populus_peu35391
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 3041221 | 3047830 | + | populus_peu35391 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 92,500.51 Da | 59.11 | 69.96 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 762 | 807 | 5.0E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 753 | 808 | 1.06E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 750 | 813 | 3.1E-8 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 764 | 802 | 10.394352 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 658 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 654 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 424 | - | - |
| Coils | Coil | Coil | 692 | 719 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_011011009.1 | PREDICTED: uncharacterized protein LOC105115719 isoform X1 [Populus euphratica] | 0 |
| TrEMBL | A0A2K1Z0G9 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G003500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology