Basic Information
Locus ID:
populus_peu35388
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 2947172 | 2955937 | - | populus_peu35388 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 104,274.75 Da | 41.41 | 76.50 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 578 | 618 | 1.15027E-17 | - |
| Pfam | PF16135 | Tify domain binding domain | 512 | 562 | 2.5E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 326 | 381 | 2.9E-15 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 579 | 620 | 1.8E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 570 | 624 | 2.88E-16 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 827 | 921 | 5.88E-6 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 659 | 719 | 8.2E-8 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 763 | 936 | 4.6E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 665 | 724 | 2.5E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 564 | 653 | 2.4E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 666 | 722 | 0.0085 | IPR001965 |
| SMART | SM00249 | PHD_3 | 578 | 619 | 3.7E-12 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 773 | 939 | 9.702393 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 576 | 621 | 10.5313 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 579 | 618 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 70 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_011009286.1 | PREDICTED: uncharacterized protein LOC105114439 [Populus euphratica] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1Z0J1 | PHD-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G003900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology