Basic Information
Locus ID:
populus_peu35373
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 2554441 | 2558686 | - | populus_peu35373 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 33,035.49 Da | 45.74 | 54.26 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 31 | 112 | 2.1E-19 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 214 | 272 | 2.3E-27 | IPR039512 |
| Pfam | PF13445 | RING-type zinc-finger | 167 | 207 | 4.1E-8 | IPR027370 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 103 | 160 | 1.7E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 165 | 214 | 1.57E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 27 | 102 | 7.85E-17 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 221 | 1.2E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 238 | 278 | 9.7E-20 | - |
| SMART | SM00184 | ring_2 | 167 | 209 | 2.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 167 | 210 | 12.164712 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 24 | 100 | 25.895082 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 102 | 166 | 35.615501 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_011032318.1 | PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Populus euphratica] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6M2F1H0 | RING-type domain-containing protein OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology