Basic Information
Locus ID:
populus_peu35235
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 27817110 | 27820236 | + | populus_peu35235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.47 | 51,075.79 Da | 40.80 | 79.98 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 358 | 446 | 1.2E-17 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 147 | 318 | 6.5E-28 | IPR043151 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 229 | 372 | 12.896057 | IPR001025 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 144 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_011025397.1 | PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like [Populus euphratica] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2Z558 | BAH domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_005887 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology