Basic Information
Locus ID:
populus_peu35082
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 26641662 | 26646041 | - | populus_peu35082 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 30,069.34 Da | 41.20 | 74.11 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 13 | 51 | 1.39226E-14 | - |
| CDD | cd03829 | Sina | 129 | 257 | 1.19562E-63 | - |
| Pfam | PF03145 | Seven in absentia protein family | 57 | 256 | 5.3E-79 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 10 | 56 | 5.18E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 68 | 260 | 1.63E-46 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 124 | 256 | 6.8E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 67 | 5.9E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 123 | 9.8E-16 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 68 | 128 | 13.835674 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 15 | 51 | 9.376395 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_011020372.1 | PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Populus euphratica] | 0 |
| Q10L91 | E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2Z5P3 | RING-type E3 ubiquitin transferase OS=Populus deltoides OX=3696 GN=H0E87_005989 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology