Basic Information
Locus ID:
populus_peu35080
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 26617389 | 26635943 | - | populus_peu35080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 196,093.31 Da | 40.36 | 99.91 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08204 | ArfGap | 1416 | 1522 | 3.55595E-55 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 215 | 502 | 2.86126E-99 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 528 | 728 | 9.92279E-90 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 839 | 1132 | 2.41811E-89 | IPR044726 |
| CDD | cd04038 | C2_ArfGAP | 1601 | 1730 | 3.05716E-68 | - |
| Pfam | PF00168 | C2 domain | 1603 | 1693 | 9.5E-24 | IPR000008 |
| Pfam | PF00005 | ABC transporter | 1174 | 1274 | 1.4E-18 | IPR003439 |
| Pfam | PF01412 | Putative GTPase activating protein for Arf | 1414 | 1529 | 2.6E-38 | IPR001164 |
| Pfam | PF00005 | ABC transporter | 546 | 680 | 2.8E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 217 | 481 | 5.4E-21 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 842 | 1085 | 2.5E-26 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1149 | 1285 | 3.78E-31 | IPR027417 |
| SUPERFAMILY | SSF57863 | ArfGap/RecO-like zinc finger | 1413 | 1527 | 3.66E-40 | IPR037278 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 206 | 513 | 1.07E-29 | IPR036640 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 1599 | 1693 | 3.12E-27 | IPR035892 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 525 | 749 | 1.46E-53 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 839 | 1138 | 2.09E-48 | IPR036640 |
| Gene3D | G3DSA:1.10.220.150 | Arf GTPase activating protein | 1403 | 1534 | 2.1E-45 | IPR038508 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 1601 | 1720 | 2.5E-28 | IPR035892 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 802 | 1138 | 4.5E-57 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 515 | 768 | 1.9E-71 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 204 | 509 | 7.7E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1141 | 1292 | 6.3E-42 | IPR027417 |
| SMART | SM00382 | AAA_5 | 555 | 728 | 2.2E-11 | IPR003593 |
| SMART | SM00105 | arf_gap_3 | 1413 | 1535 | 1.9E-46 | IPR001164 |
| SMART | SM00239 | C2_3c | 1603 | 1698 | 8.5E-21 | IPR000008 |
| SMART | SM00382 | AAA_5 | 1183 | 1335 | 1.6 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 528 | 751 | 22.742537 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 841 | 1120 | 33.989426 | IPR011527 |
| ProSiteProfiles | PS50115 | ARF GTPase-activating proteins domain profile. | 1413 | 1535 | 27.885178 | IPR001164 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 1585 | 1700 | 18.680971 | IPR000008 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 214 | 494 | 28.920296 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 653 | 667 | - | IPR017871 |
| PRINTS | PR00405 | HIV Rev interacting protein signature | 1444 | 1461 | 4.4E-19 | IPR001164 |
| PRINTS | PR00405 | HIV Rev interacting protein signature | 1465 | 1486 | 4.4E-19 | IPR001164 |
| PRINTS | PR00405 | HIV Rev interacting protein signature | 1425 | 1444 | 4.4E-19 | IPR001164 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 762 | 791 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1339 | 1376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 763 | 790 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_052305802.1 | ABC transporter C family member 3-like [Populus trichocarpa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2JWM3 | ABC-type xenobiotic transporter OS=Salix viminalis OX=40686 GN=SVIM_LOCUS524 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology