Basic Information
Locus ID:
populus_peu34977
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
DNA repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 25830852 | 25838083 | - | populus_peu34977 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 58,806.84 Da | 46.56 | 89.38 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 497 | 539 | 2.14498E-23 | - |
| CDD | cd01805 | Ubl_Rad23 | 148 | 221 | 3.06915E-28 | - |
| Pfam | PF09280 | XPC-binding domain | 420 | 475 | 4.5E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 291 | 329 | 1.6E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 150 | 223 | 6.9E-16 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 501 | 536 | 7.4E-11 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 480 | 542 | 2.92E-14 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 143 | 236 | 1.15E-21 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 416 | 483 | 2.35E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 288 | 331 | 6.89E-10 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 492 | 540 | 2.1E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 142 | 224 | 8.9E-27 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 411 | 475 | 4.8E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 284 | 332 | 3.9E-19 | - |
| SMART | SM00213 | ubq_7 | 148 | 222 | 1.4E-21 | IPR000626 |
| SMART | SM00727 | CBM | 418 | 461 | 8.9E-5 | IPR006636 |
| SMART | SM00165 | uba_6 | 501 | 538 | 4.4E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 291 | 331 | 4.1E-5 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 148 | 331 | 7.4E-62 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 499 | 539 | 15.125283 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 289 | 332 | 12.016758 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 148 | 226 | 17.931252 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 495 | 511 | 3.8E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 512 | 526 | 3.8E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 527 | 542 | 3.8E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 446 | 468 | 3.8E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 272 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_034922258.1 | ubiquitin receptor RAD23b-like [Populus alba] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A8X8A6S4 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_014471 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology