Basic Information
Locus ID:
populus_peu34926
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Sister chromatid cohesion protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 25498515 | 25509019 | + | populus_peu34926 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 96,928.39 Da | 48.51 | 71.37 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 624 | 667 | 4.14E-6 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 38 | 233 | 1.95E-8 | IPR016024 |
| Gene3D | G3DSA:2.30.30.140 | - | 623 | 673 | 3.6E-11 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 14 | 230 | 8.4E-6 | IPR011989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 863 | 877 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 591 | 618 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 848 | 862 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 438 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 736 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 787 | 801 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 877 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 802 | 842 | - | - |
| Coils | Coil | Coil | 26 | 46 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80810.5 | - | 0 |
| RefSeq | XP_011020618.1 | PREDICTED: uncharacterized protein LOC105122931 isoform X1 [Populus euphratica] | 0 |
| A8MRD9 | Sister chromatid cohesion protein PDS5 homolog D OS=Arabidopsis thaliana OX=3702 GN=PDS5D PE=2 SV=3 | 0 | |
| TrEMBL | A0A2K2B905 | Tudor domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G181300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology