Basic Information
Locus ID:
populus_peu34924
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 25489990 | 25491223 | + | populus_peu34924 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 23,271.96 Da | 35.27 | 91.22 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 15 | 108 | 9.5E-9 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 12 | 196 | 1.52E-57 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 111 | 141 | 6.5E-6 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 110 | 3.6E-38 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 142 | 196 | 3.0E-13 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80780.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_011020623.1 | PREDICTED: probable CCR4-associated factor 1 homolog 6 [Populus euphratica] | 0 |
| Q9SAI2 | Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4V6AAH3 | poly(A)-specific ribonuclease OS=Populus alba OX=43335 GN=D5086_0000100350 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology