Basic Information
Locus ID:
populus_peu34901
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 25317828 | 25325943 | + | populus_peu34901 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 82,891.56 Da | 43.33 | 68.47 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 473 | 758 | 2.34822E-58 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 724 | 758 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 559 | 595 | 2.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 521 | 551 | 1.1E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 3.8E-8 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 640 | 675 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 482 | 509 | 6.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 470 | 758 | 1.24E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 610 | 758 | 6.0E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 452 | 609 | 4.8E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 555 | 595 | 1.5E-5 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 4.5E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 719 | 758 | 0.0061 | IPR001680 |
| SMART | SM00320 | WD40_4 | 470 | 509 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 598 | 634 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 637 | 675 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 512 | 551 | 2.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 678 | 717 | 1.1 | IPR001680 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 568 | 612 | 8.122517 | IPR007527 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 726 | 758 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 562 | 597 | 8.861059 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 477 | 512 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.665252 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 644 | 684 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 519 | 551 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 562 | 604 | 10.909469 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 726 | 758 | 10.653776 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 477 | 512 | 8.781968 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 519 | 551 | 13.215325 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 496 | 510 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 538 | 552 | 5.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 496 | 510 | 5.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 745 | 758 | 5.3E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 393 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_011020662.1 | PREDICTED: transcriptional corepressor LEUNIG-like [Populus euphratica] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | B9H0A2 | LisH domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G178600 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology