Basic Information
Locus ID:
populus_peu34533
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 22404482 | 22406464 | - | populus_peu34533 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.46 | 27,836.28 Da | 60.49 | 70.08 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 186 | 229 | 4.71242E-20 | - |
| Pfam | PF13639 | Ring finger domain | 185 | 229 | 7.2E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 182 | 231 | 1.09E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 233 | 1.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 228 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 229 | 12.99088 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 256 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011022503.1 | PREDICTED: RING-H2 finger protein ATL20-like [Populus euphratica] | 0 |
| Q9FL42 | Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X8D9V0 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_014063 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology