Basic Information
Locus ID:
populus_peu34503
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 22187422 | 22195413 | - | populus_peu34503 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 113,997.21 Da | 44.76 | 76.61 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 928 | 960 | 0.037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 840 | 876 | 0.035 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 754 | 783 | 0.059 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 288 | 559 | 8.36E-12 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 754 | 964 | 7.94E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 727 | 989 | 1.2E-87 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 289 | 572 | 1.0E-17 | - |
| SMART | SM00320 | WD40_4 | 879 | 918 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 794 | 833 | 0.0076 | IPR001680 |
| SMART | SM00320 | WD40_4 | 744 | 783 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 836 | 876 | 2.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 922 | 960 | 2.1E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 800 | 842 | 10.207686 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 130 | 559 | 8.513628 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 929 | 969 | 13.148488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 929 | 962 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 843 | 885 | 10.775796 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 947 | 961 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 820 | 834 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 863 | 877 | 6.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 820 | 834 | 6.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 947 | 961 | 6.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 451 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_011022550.1 | PREDICTED: protein SPA1-RELATED 2-like [Populus euphratica] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4V6A2F0 | Protein SPA1-RELATED 2-like OS=Populus alba OX=43335 GN=D5086_0000275950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology