Basic Information
Locus ID:
populus_peu34469
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 21917273 | 21923967 | - | populus_peu34469 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 92,407.38 Da | 39.75 | 86.13 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 553 | 686 | 4.77728E-23 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 555 | 685 | 4.8E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 708 | 749 | 1.1E-11 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 118 | 351 | 2.53E-6 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 514 | 760 | 1.4E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 514 | 798 | 5.0E-95 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 35 | 342 | 1.8E-5 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 687 | 792 | 5.0E-95 | - |
| SMART | SM00382 | AAA_5 | 551 | 688 | 8.0E-21 | IPR003593 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 451 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_011022599.1 | PREDICTED: uncharacterized protein LOC105124323 [Populus euphratica] | 0 |
| Q9P7J5 | Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC24B10.10c PE=3 SV=1 | 0 | |
| TrEMBL | A0A3N7FNH3 | AAA domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G133700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology