Basic Information
Locus ID:
populus_peu34274
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 20380681 | 20382918 | + | populus_peu34274 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 37,712.74 Da | 38.77 | 101.27 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10557 | Cullin protein neddylation domain | 141 | 203 | 1.1E-25 | IPR019559 |
| Pfam | PF00888 | Cullin family | 3 | 114 | 3.3E-35 | IPR001373 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 126 | 207 | 2.18E-25 | IPR036390 |
| SUPERFAMILY | SSF75632 | Cullin homology domain | 4 | 127 | 1.09E-36 | IPR036317 |
| Gene3D | G3DSA:3.30.230.130 | Cullin; Chain C, Domain 2 | 1 | 126 | 1.0E-38 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 127 | 207 | 1.1E-30 | IPR036388 |
| SMART | SM00884 | Cullin_Nedd8_2 | 138 | 205 | 8.6E-35 | IPR019559 |
| ProSiteProfiles | PS50069 | Cullin family profile. | 1 | 86 | 18.456894 | IPR016158 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04340 (Hedgehog signaling pathway)
map04340 (Hedgehog signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02570.1 | cullin 1. Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response. | 0 |
| RefSeq | XP_011033892.1 | PREDICTED: cullin-1-like [Populus euphratica] | 0 |
| Q94AH6 | Cullin-1 OS=Arabidopsis thaliana OX=3702 GN=CUL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2Z8B5 | CULLIN_2 domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_006730 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag9G02226 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g35050.v2.2 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00015274, Pov_00015275, Pov_00032436 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0065850 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.195 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2021 |
| Salicaceae | Populus euphratica | 2 | populus_peu22125, populus_peu34274 |