Basic Information
Locus ID:
populus_peu34153
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 19353476 | 19363563 | - | populus_peu34153 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 66,961.62 Da | 43.15 | 86.36 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 198 | 304 | 2.18363E-57 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 29 | 159 | 1.9E-14 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 195 | 294 | 1.7E-13 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 492 | 552 | 2.9E-8 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 307 | 363 | 3.3E-11 | IPR032284 |
| SUPERFAMILY | SSF47819 | HRDC-like | 492 | 556 | 7.29E-5 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 66 | 310 | 2.0E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 198 | 373 | 4.8E-52 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 488 | 556 | 1.4E-10 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 5 | 197 | 9.8E-67 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 374 | 468 | 2.2E-23 | IPR036388 |
| SMART | SM00490 | helicmild6 | 214 | 295 | 2.5E-26 | IPR001650 |
| SMART | SM00487 | ultradead3 | 23 | 206 | 1.5E-16 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 35 | 190 | 20.877007 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 188 | 334 | 18.411236 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 483 | 562 | 12.243401 | IPR002121 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 579 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_011028013.1 | PREDICTED: mediator of RNA polymerase II transcription subunit 34 [Populus euphratica] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2B4V9 | ATP-dependent DNA helicase OS=Populus trichocarpa OX=3694 GN=POPTR_003G104300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology