Basic Information
Locus ID:
populus_peu34112
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 19064799 | 19078190 | + | populus_peu34112 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 105,043.88 Da | 42.36 | 70.96 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 464 | 520 | 1.64507E-28 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 465 | 519 | 2.7E-11 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 529 | 887 | 7.6E-37 | IPR001525 |
| Pfam | PF01426 | BAH domain | 201 | 310 | 4.7E-12 | IPR001025 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 453 | 525 | 2.1E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 354 | 890 | 4.83E-79 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 339 | 443 | 1.6E-15 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 134 | 299 | 4.8E-46 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 465 | 907 | 9.3E-214 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 684 | 856 | 9.3E-214 | - |
| SMART | SM00298 | chromo_7 | 464 | 523 | 3.3E-12 | IPR000953 |
| SMART | SM00439 | BAH_4 | 198 | 314 | 2.3E-25 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 533 | 886 | 1.7E-31 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 465 | 521 | 12.467001 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 355 | 897 | 48.064053 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 198 | 314 | 18.110786 | IPR001025 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 535 | 547 | - | IPR018117 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 872 | 890 | - | IPR031303 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 624 | 637 | 5.6E-13 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 356 | 372 | 5.6E-13 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 578 | 592 | 5.6E-13 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 139 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.1 | chromomethylase 2. | 0 |
| RefSeq | XP_011028080.1 | PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Populus euphratica] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A2K2B4M4 | Cytosine-specific methyltransferase OS=Populus trichocarpa OX=3694 GN=POPTR_003G100000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology