Basic Information
Locus ID:
populus_peu34071
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 18683462 | 18684862 | - | populus_peu34071 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 22,663.26 Da | 44.76 | 86.68 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 93 | 155 | 8.60631E-21 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 91 | 154 | 4.3E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 16 | 78 | 5.3E-16 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 7 | 156 | 2.47E-44 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 83 | 161 | 9.0E-25 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 82 | 6.6E-22 | - |
| SMART | SM00054 | efh_1 | 129 | 157 | 2.9E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 53 | 81 | 0.3 | IPR002048 |
| SMART | SM00054 | efh_1 | 17 | 45 | 6.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 93 | 121 | 3.2E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 89 | 124 | 15.545536 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 49 | 84 | 10.691735 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 125 | 160 | 13.899706 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 13 | 48 | 14.876045 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 62 | 74 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 138 | 150 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 102 | 114 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 26 | 38 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_011028128.1 | PREDICTED: probable calcium-binding protein CML11 [Populus euphratica] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2Z9B1 | Calcium-binding protein CML11 OS=Populus deltoides OX=3696 GN=H0E87_006924 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology