Basic Information
Locus ID:
populus_peu34068
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 18659607 | 18664409 | + | populus_peu34068 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 30,129.81 Da | 41.03 | 79.40 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 11 | 70 | 3.8E-8 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 6 | 80 | 4.34E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 4 | 78 | 5.0E-11 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 9 | 78 | 1.3E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 8 | 82 | 11.298236 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 284 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_011013892.1 | PREDICTED: uncharacterized protein LOC105117822 [Populus euphratica] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6M2EEC1 | RRM domain-containing protein OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology