Basic Information
Locus ID:
populus_peu34044
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 18477997 | 18480252 | + | populus_peu34044 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 41,207.78 Da | 57.63 | 74.43 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 143 | 186 | 1.62709E-16 | - |
| Pfam | PF13639 | Ring finger domain | 143 | 186 | 5.1E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 192 | 2.02E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 191 | 1.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 144 | 185 | 1.6E-7 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 140 | 193 | 0.009 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 144 | 186 | 12.887609 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 232 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011028171.1 | PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Populus euphratica] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T2Z907 | RING-type E3 ubiquitin transferase OS=Populus deltoides OX=3696 GN=H0E87_006947 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology