Basic Information
Locus ID:
populus_peu33848
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 16550045 | 16550878 | - | populus_peu33848 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 30,516.16 Da | 76.20 | 85.42 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 98 | 141 | 1.77794E-19 | - |
| Pfam | PF13639 | Ring finger domain | 98 | 141 | 4.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 79 | 147 | 7.07E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 149 | 5.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 99 | 140 | 5.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 99 | 141 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 222 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011031829.1 | PREDICTED: RING-H2 finger protein ATL3 [Populus euphratica] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2Z9Y7 | RING-type E3 ubiquitin transferase OS=Populus deltoides OX=3696 GN=H0E87_007124 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology