Basic Information
Locus ID:
populus_peu33809
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Oligouridylate-binding protein 1B-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 16025210 | 16031044 | + | populus_peu33809 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 45,636.95 Da | 52.08 | 72.29 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 4.01953E-36 | - |
| CDD | cd12354 | RRM3_TIA1_like | 259 | 334 | 5.54354E-35 | - |
| CDD | cd12619 | RRM2_PUB1 | 139 | 213 | 6.27189E-53 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | 5.1E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 3.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 261 | 320 | 7.8E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 247 | 342 | 1.63E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 132 | 220 | 6.18E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 131 | 3.76E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 239 | 339 | 2.6E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 135 | 2.3E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 136 | 238 | 2.6E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 139 | 212 | 3.5E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 260 | 330 | 3.6E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 2.1E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 17.352901 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 334 | 14.999257 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 14.999257 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 255 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_011036478.1 | PREDICTED: oligouridylate-binding protein 1B-like [Populus euphratica] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5R0E7 | Oligouridylate-binding family protein OS=Populus alba OX=43335 GN=D5086_0000034640 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology