Basic Information
Locus ID:
populus_peu33708
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 14584663 | 14587456 | + | populus_peu33708 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 73,638.00 Da | 53.07 | 58.98 | -0.96 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 545 | 637 | 1.8E-32 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 371 | 397 | 0.011 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 309 | 530 | 3.9E-23 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 371 | 397 | 0.0023 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 366 | 400 | 9.317163 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 283 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_011039989.1 | PREDICTED: pentatricopeptide repeat-containing protein At2g15690 isoform X1 [Populus euphratica] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X8D7C2 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_013362 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology