Basic Information
Locus ID:
populus_peu33693
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 14398850 | 14404056 | + | populus_peu33693 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 50,516.25 Da | 29.89 | 84.67 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 17 | 297 | 1.93435E-69 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 220 | 256 | 2.4E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 177 | 215 | 1.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 132 | 171 | 4.7E-5 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 319 | 370 | 2.5E-8 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 91 | 127 | 3.4E-6 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 373 | 442 | 4.6E-14 | IPR006692 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 297 | 7.33E-81 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 300 | 1.8E-115 | IPR015943 |
| SMART | SM00320 | WD40_4 | 46 | 85 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 215 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 257 | 3.3E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 385 | 419 | 420.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 171 | 3.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 43 | 0.45 | IPR001680 |
| SMART | SM00320 | WD40_4 | 88 | 127 | 9.7E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 95 | 127 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 95 | 127 | 10.601049 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 172 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 225 | 266 | 15.855363 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 218 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 180 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 224 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 225 | 256 | 12.710129 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 158 | 172 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 244 | 258 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 202 | 216 | 2.2E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52360.3 | - | 0 |
| RefSeq | XP_034899985.1 | coatomer subunit beta'-2 isoform X2 [Populus alba] | 0 |
| Q9C827 | Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1 | 0 | |
| TrEMBL | A0A836J4N3 | Coatomer subunit beta' OS=Salix suchowensis OX=1278906 GN=IMY05_003G0028200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology