Basic Information
Locus ID:
populus_peu33504
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
PLDa1
Description:
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4339103 | 4347386 | - | populus_peu33504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 91,666.49 Da | 41.31 | 83.00 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09197 | PLDc_pPLDalpha_1 | 202 | 378 | 4.79043E-127 | - |
| CDD | cd09199 | PLDc_pPLDalpha_2 | 492 | 701 | 7.5604E-158 | - |
| CDD | cd04015 | C2_plant_PLD | 2 | 148 | 2.72586E-63 | - |
| Pfam | PF12357 | Phospholipase D C terminal | 726 | 798 | 3.4E-29 | IPR024632 |
| Pfam | PF00614 | Phospholipase D Active site motif | 326 | 364 | 3.7E-10 | IPR001736 |
| Pfam | PF00168 | C2 domain | 9 | 126 | 2.7E-16 | IPR000008 |
| Pfam | PF00614 | Phospholipase D Active site motif | 655 | 681 | 1.3E-7 | IPR001736 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 6 | 150 | 1.93E-20 | IPR035892 |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 151 | 446 | 2.2E-35 | - |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 440 | 738 | 9.03E-30 | - |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 199 | 443 | 8.1E-23 | - |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 475 | 696 | 4.4E-22 | - |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 6 | 156 | 3.2E-16 | IPR035892 |
| SMART | SM00239 | C2_3c | 9 | 124 | 5.3E-15 | IPR000008 |
| SMART | SM00155 | pld_4 | 654 | 681 | 1.5E-8 | IPR001736 |
| SMART | SM00155 | pld_4 | 326 | 364 | 4.9E-4 | IPR001736 |
| PIRSF | PIRSF036470 | PLD_plant | 1 | 808 | 0.0 | IPR011402 |
| ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 654 | 681 | 15.2604 | IPR001736 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 1 | 125 | 14.725323 | IPR000008 |
| ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 326 | 364 | 11.120799 | IPR001736 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko00564 (Glycerophospholipid metabolism)
map00564 (Glycerophospholipid metabolism)
ko00565 (Ether lipid metabolism)
map00565 (Ether lipid metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04024 (cAMP signaling pathway)
map04024 (cAMP signaling pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04072 (Phospholipase D signaling pathway)
map04072 (Phospholipase D signaling pathway)
map04666 (Fc gamma R-mediated phagocytosis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15730.1 | phospholipase D alpha 1. Encodes phospholipase D alpha 1 (PLD alpha 1). Positive regulator of abscisic acid (ABA) mediated stomatal movements. PLD alpha 1 plays an important role in seed deterioration and aging in Arabidopsis. | 0 |
| RefSeq | XP_011008452.1 | PREDICTED: phospholipase D alpha 1-like [Populus euphratica] | 0 |
| Q41142 | Phospholipase D alpha 1 OS=Ricinus communis OX=3988 GN=PLD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2ZBC9 | Phospholipase D OS=Populus deltoides OX=3696 GN=H0E87_007417 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology