Basic Information
Locus ID:
populus_peu33477
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
TPL
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3964011 | 3984267 | + | populus_peu33477 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 129,102.07 Da | 39.69 | 83.65 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 491 | 525 | 9.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 954 | 987 | 0.012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 452 | 715 | 9.85E-39 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 557 | 1085 | 7.38E-37 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 381 | 478 | 2.2E-7 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 365 | 580 | 5.8E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 582 | 719 | 5.2E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 772 | 1026 | 8.3E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1029 | 1166 | 2.1E-5 | IPR015943 |
| SMART | SM00320 | WD40_4 | 378 | 417 | 43.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 572 | 615 | 16.0 | IPR001680 |
| SMART | SM00667 | Lish | 36 | 68 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 484 | 525 | 1.2E-5 | IPR001680 |
| SMART | SM00668 | ctlh | 66 | 124 | 1.2E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 866 | 902 | 68.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 948 | 987 | 2.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 661 | 702 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 618 | 658 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 528 | 569 | 0.045 | IPR001680 |
| SMART | SM00320 | WD40_4 | 439 | 478 | 9.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1039 | 1080 | 4.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 905 | 945 | 1.6 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 36 | 68 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 491 | 534 | 11.277069 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 66 | 124 | 14.141059 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 955 | 987 | 9.757418 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 955 | 987 | 11.678087 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 636 | 667 | 9.171722 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 512 | 526 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_011044878.1 | PREDICTED: topless-related protein 1 isoform X2 [Populus euphratica] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A3N7G1L8 | TOPLESS OS=Populus trichocarpa OX=3694 GN=POPTR_003G030000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology