Basic Information
Locus ID:
populus_peu33356
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 2038144 | 2047229 | + | populus_peu33356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.70 | 79,863.17 Da | 47.92 | 76.07 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 428 | 575 | 7.89917E-66 | - |
| Pfam | PF09382 | RQC domain | 603 | 661 | 5.1E-11 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 448 | 567 | 1.7E-16 | IPR001650 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 604 | 662 | 8.57E-10 | IPR036390 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 358 | 576 | 1.78E-41 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 599 | 668 | 8.2E-9 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 341 | 427 | 3.4E-31 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 428 | 598 | 2.0E-43 | IPR027417 |
| SMART | SM00490 | helicmild6 | 487 | 568 | 4.2E-23 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 357 | 575 | 4.3E-85 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 449 | 604 | 17.365562 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 263 | 420 | 12.294704 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 359 | 368 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 64 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_024452695.1 | ATP-dependent DNA helicase Q-like 4A isoform X2 [Populus trichocarpa] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8A3E2 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_011359 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology