Basic Information
Locus ID:
populus_peu33352
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 1996303 | 2005598 | + | populus_peu33352 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 130,434.46 Da | 48.60 | 80.64 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 630 | 762 | 2.40495E-73 | - |
| CDD | cd17920 | DEXHc_RecQ | 427 | 629 | 2.14814E-103 | - |
| Pfam | PF09382 | RQC domain | 853 | 969 | 2.2E-21 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 1000 | 1068 | 3.5E-15 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 441 | 609 | 3.6E-18 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 764 | 845 | 6.1E-15 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 646 | 752 | 2.5E-17 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 628 | 894 | 3.94E-58 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 996 | 1073 | 3.27E-14 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 403 | 771 | 8.84E-43 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 630 | 849 | 2.3E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 403 | 629 | 1.4E-90 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 992 | 1078 | 6.8E-23 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 853 | 964 | 2.6E-20 | IPR036388 |
| SMART | SM00341 | hrdc7 | 996 | 1078 | 9.6E-6 | IPR002121 |
| SMART | SM00956 | RQC_2 | 855 | 967 | 9.8E-25 | IPR018982 |
| SMART | SM00487 | ultradead3 | 435 | 638 | 1.0E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 672 | 753 | 1.0E-26 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 431 | 907 | 3.3E-160 | IPR004589 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 662 | 704 | 9.004007 | IPR001763 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 996 | 1078 | 18.719727 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 647 | 801 | 19.591354 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 447 | 622 | 21.197662 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 561 | 570 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1101 | 1146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1101 | 1118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1076 | 1095 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1129 | 1143 | - | - |
| Coils | Coil | Coil | 319 | 346 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_002303149.3 | ATP-dependent DNA helicase Q-like 4A isoform X1 [Populus trichocarpa] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K2B035 | DNA helicase OS=Populus trichocarpa OX=3694 GN=POPTR_003G017500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology