Basic Information
Locus ID:
populus_peu33046
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 29822582 | 29823073 | + | populus_peu33046 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 17,518.08 Da | 51.73 | 93.31 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 101 | 144 | 9.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 101 | 152 | 9.84E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 150 | 3.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 102 | 143 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 102 | 144 | 12.164712 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052306289.1 | E3 ubiquitin-protein ligase ATL23 [Populus trichocarpa] | 0 |
| Q8L9W3 | E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana OX=3702 GN=ATL23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2ZBV0 | RING-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_003803 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology