Basic Information
Locus ID:
populus_peu32718
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 27492179 | 27496651 | + | populus_peu32718 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 99,294.61 Da | 47.92 | 56.58 | -1.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 620 | 670 | 8.0E-20 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 687 | 744 | 1.02E-12 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 686 | 762 | 6.5E-18 | IPR013083 |
| SMART | SM00384 | AT_hook_2 | 265 | 277 | 30.0 | IPR017956 |
| SMART | SM00249 | PHD_3 | 739 | 799 | 14.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 697 | 738 | 5.7E-11 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 124 | 136 | 0.5 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 218 | 230 | 100.0 | IPR017956 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 695 | 740 | 9.899401 | IPR019787 |
| PRINTS | PR00929 | AT-hook-like domain signature | 169 | 180 | 5.9E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 263 | 273 | 5.9E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 124 | 134 | 5.9E-5 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 290 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36670.2 | - | 0 |
| RefSeq | XP_011026150.1 | PREDICTED: uncharacterized protein LOC105126839 isoform X1 [Populus euphratica] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3N7ELV4 | PHD-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G051400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology