Basic Information
Locus ID:
populus_peu32670
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 27099071 | 27106618 | + | populus_peu32670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 57,154.23 Da | 46.55 | 90.78 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 195 | 487 | 2.08973E-46 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 194 | 229 | 5.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 452 | 487 | 5.6E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 294 | 316 | 0.046 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 406 | 444 | 0.077 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 240 | 275 | 6.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 189 | 487 | 1.13E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 187 | 487 | 2.9E-65 | IPR015943 |
| SMART | SM00320 | WD40_4 | 403 | 445 | 0.88 | IPR001680 |
| SMART | SM00668 | ctlh | 54 | 111 | 4.3E-5 | IPR006595 |
| SMART | SM00320 | WD40_4 | 236 | 275 | 3.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 448 | 488 | 1.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 317 | 0.0099 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 399 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 191 | 230 | 3.0E-8 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 54 | 111 | 9.983543 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 455 | 491 | 11.840134 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 198 | 232 | 10.732868 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 284 | 15.019908 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 21 | 53 | 8.093683 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 455 | 491 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 243 | 280 | 11.471045 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 198 | 232 | 12.914561 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 217 | 231 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_011026207.1 | PREDICTED: WD repeat-containing protein 26-like [Populus euphratica] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8AK94 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_007534 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology