Basic Information
Locus ID:
populus_peu32188
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 23227507 | 23235038 | - | populus_peu32188 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 123,651.69 Da | 49.77 | 71.77 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 77 | 114 | 1.0E-8 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 601 | 903 | 1.4E-43 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 597 | 909 | 2.16E-83 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 74 | 117 | 1.03E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 69 | 117 | 3.1E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 593 | 914 | 5.1E-88 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 601 | 906 | 48.557758 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 77 | 114 | 11.533531 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 602 | 617 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 77 | 114 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 987 | 1008 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1031 | 1049 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1031 | 1072 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_011016914.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Populus euphratica] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5PQJ2 | UBIQUITIN-SPECIFIC PROTEASE 16 family protein OS=Populus alba OX=43335 GN=D5086_0000196570 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology