Basic Information
Locus ID:
populus_peu32141
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 22711207 | 22715075 | - | populus_peu32141 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 67,962.65 Da | 32.57 | 78.37 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 404 | 580 | 8.51086E-52 | - |
| CDD | cd10320 | RGL4_N | 10 | 277 | 2.11791E-78 | - |
| CDD | cd10316 | RGL4_M | 307 | 403 | 2.44351E-32 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 76 | 176 | 2.6E-48 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 330 | 401 | 2.3E-26 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 404 | 579 | 2.7E-49 | IPR029411 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 14 | 267 | 7.85E-10 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 307 | 399 | 6.28E-8 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 404 | 580 | 5.1E-42 | IPR008979 |
| Gene3D | G3DSA:2.70.98.10 | - | 7 | 283 | 2.2E-11 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 304 | 401 | 6.4E-6 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 402 | 580 | 1.6E-14 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_011016984.1 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105120478 [Populus euphratica] | 0 |
| TrEMBL | A0A2K2BH47 | rhamnogalacturonan endolyase OS=Populus trichocarpa OX=3694 GN=POPTR_002G110000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology