Basic Information
Locus ID:
populus_peu32073
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
40s ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 22031621 | 22038732 | + | populus_peu32073 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.62 | 45,986.79 Da | 44.63 | 95.04 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01885 | RNA 2'-phosphotransferase, Tpt1 / KptA family | 1 | 56 | 4.2E-17 | IPR002745 |
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 314 | 408 | 1.3E-25 | IPR027486 |
| SUPERFAMILY | SSF56399 | ADP-ribosylation | 1 | 59 | 1.24E-11 | - |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 313 | 409 | 3.79E-28 | IPR036838 |
| Gene3D | G3DSA:3.20.170.30 | - | 1 | 73 | 3.0E-14 | IPR042081 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 300 | 411 | 1.5E-44 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 314 | 408 | 9.8E-37 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 311 | 409 | 7.2E-39 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 336 | 351 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 347 | 362 | 9.7E-12 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 312 | 325 | 9.7E-12 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 369 | 383 | 9.7E-12 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 310 | 409 | 18.528154 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_011017098.1 | PREDICTED: 40S ribosomal protein S20-2-like [Populus euphratica] | 0 |
| Q9STY6 | Small ribosomal subunit protein uS10y OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U5P4Z2 | 40S ribosomal protein S20-2-like OS=Populus alba OX=43335 GN=D5086_0000224010 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology