Basic Information
Locus ID:
populus_peu31934
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 20933031 | 20934857 | + | populus_peu31934 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 69,658.66 Da | 44.83 | 61.12 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 109 | 159 | 1.27802E-13 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 109 | 140 | 2.0E-4 | IPR018957 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 258 | 306 | 5.4E-7 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 178 | 240 | 2.4E-12 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 105 | 191 | 2.54E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 179 | 247 | 3.53E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 253 | 313 | 1.06E-13 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 236 | 480 | 2.1E-70 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 193 | 7.2E-15 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 178 | 240 | 7.4E-21 | IPR002867 |
| SMART | SM00547 | zf_4 | 559 | 583 | 3.2E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 244 | 310 | 0.15 | IPR002867 |
| SMART | SM00547 | zf_4 | 585 | 607 | 0.49 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 557 | 581 | 8.388616 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 109 | 153 | 9.435407 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 581 | 608 | 8.20794 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 105 | 314 | 43.613846 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 561 | 580 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 585 | 604 | - | IPR001876 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 289 | 298 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_011017274.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI8 [Populus euphratica] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K2BI53 | RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Populus trichocarpa OX=3694 GN=POPTR_002G131300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology