Basic Information
Locus ID:
populus_peu31751
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
NTMC2T4.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 19426127 | 19432446 | - | populus_peu31751 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 63,374.20 Da | 32.71 | 102.62 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 345 | 433 | 1.1474E-27 | - |
| Pfam | PF00168 | C2 domain | 343 | 436 | 3.3E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 147 | 327 | 2.7E-15 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 343 | 470 | 1.36E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 339 | 497 | 3.6E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 344 | 441 | 1.3E-21 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 326 | 442 | 21.443533 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 145 | 328 | 23.208082 | IPR031468 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 579 | - | - |
| Coils | Coil | Coil | 470 | 497 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_011002093.1 | PREDICTED: synaptotagmin-5-like [Populus euphratica] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2ZHF1 | Synaptotagmin-4-like OS=Populus deltoides OX=3696 GN=H0E87_004896 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology