HalophFGD

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Basic Information
Locus ID: populus_peu31675
Species & Taxonomic ID: Populus euphratica & 75702
Genome Assembly: GWHAAYU00000000
Description: Riboflavin biosynthesis protein
Maps and Mapping Data
Chromosome Start End Strand ID
chr2 18804985 18826699 + populus_peu31675
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.37 85,016.70 Da 46.60 83.55 -0.33
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd13999 STKc_MAP3K-like 140 391 1.00635E-91 -
CDD cd01284 Riboflavin_deaminase-reductase 488 600 4.16317E-53 -
Pfam PF07714 Protein tyrosine and serine/threonine kinase 140 391 4.7E-56 IPR001245
Pfam PF12796 Ankyrin repeats (3 copies) 31 114 6.0E-10 IPR020683
Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 484 581 5.1E-20 IPR002125
SUPERFAMILY SSF48403 Ankyrin repeat 18 111 2.93E-20 IPR036770
SUPERFAMILY SSF53927 Cytidine deaminase-like 484 623 2.61E-45 IPR016193
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 139 430 1.03E-70 IPR011009
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 127 213 3.2E-21 -
Gene3D G3DSA:3.40.430.10 Dihydrofolate Reductase, subunit A 622 760 8.9E-6 IPR024072
Gene3D G3DSA:3.40.140.10 Cytidine Deaminase, domain 2 474 621 3.9E-46 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 214 412 2.9E-52 -
Gene3D G3DSA:1.25.40.20 - 9 126 6.4E-22 IPR036770
SMART SM00248 ANK_2a 87 117 1900.0 IPR002110
SMART SM00248 ANK_2a 54 83 2.0E-5 IPR002110
TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 488 753 2.9E-69 IPR004794
ProSiteProfiles PS50297 Ankyrin repeat region circular profile. 54 86 12.142647 -
ProSiteProfiles PS50088 Ankyrin repeat profile. 54 86 13.51743 IPR002110
ProSiteProfiles PS51747 Cytidine and deoxycytidylate deaminases domain profile. 482 604 24.686924 IPR002125
ProSiteProfiles PS50011 Protein kinase domain profile. 134 398 43.353939 IPR000719
ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 531 569 - IPR016192
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 140 161 - IPR017441
PRINTS PR00109 Tyrosine kinase catalytic domain signature 209 222 6.4E-12 IPR001245
PRINTS PR00109 Tyrosine kinase catalytic domain signature 362 384 6.4E-12 IPR001245
PRINTS PR00109 Tyrosine kinase catalytic domain signature 317 339 6.4E-12 IPR001245
PRINTS PR00109 Tyrosine kinase catalytic domain signature 248 266 6.4E-12 IPR001245
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation) GO:0009231 (riboflavin biosynthetic process)
Molecular Function:
GO:0003824 (catalytic activity) GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding) GO:0008270 (zinc ion binding) GO:0008835 (diaminohydroxyphosphoribosylaminopyrimidine deaminase activity) GO:0016787 (hydrolase activity)
KEGG Pathway
KO Term:
K11752 (diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193])
Pathway:
ko00740 (Riboflavin metabolism) map00740 (Riboflavin metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko02024 (Quorum sensing) map02024 (Quorum sensing)
Module:
M00125 (Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD)
Reaction:
R03458 (5-Amino-6-(5'-phospho-D-ribitylamino)uracil + NADP+ <=> 5-Amino-6-(5'-phosphoribosylamino)uracil + NADPH + H+) R03459 (2,5-Diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one + H2O <=> 5-Amino-6-(5'-phosphoribosylamino)uracil + Ammonia)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G20960.1 Cytidine/deoxycytidylate deaminase family protein. encodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesis 0
RefSeq XP_011023352.1 PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Populus euphratica] 0
Swiss-Prot Q8GWP5 Riboflavin biosynthesis protein PYRD, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PYRD PE=1 SV=1 0
TrEMBL A0A1R3I8A3 diaminohydroxyphosphoribosylaminopyrimidine deaminase OS=Corchorus capsularis OX=210143 GN=CCACVL1_14137 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 1 jg29348
Anacardiaceae Pistacia vera 1 pistato.v30010930
Asparagaceae Asparagus officinalis 1 AsparagusV1_04.1310.V1.1
Asteraceae Flaveria trinervia 1 Ftri5G14906
Malvaceae Hibiscus hamabo Siebold & Zucc. 2 nbisL1-mrna-6135, nbisL1-mrna-9505
Plantaginaceae Plantago ovata 1 Pov_00016722
Rhizophoraceae Bruguiera sexangula 1 evm.TU.Scaffold_9_RagTag.488
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-21756
Rhizophoraceae Ceriops zippeliana 3 nbisL1-mrna-7321, nbisL1-mrna-7322, nbisL1-mrna-7323
Rhizophoraceae Kandelia candel 1 evm.TU.utg000003l.269
Rhizophoraceae Kandelia obovata 1 Maker00017523
Rhizophoraceae Rhizophora mangle 1 nbisL1-mrna-19640
Salicaceae Populus euphratica 1 populus_peu31675
Solanaceae Lycium barbarum 1 gene-LOC132610332
Solanaceae Solanum chilense 1 SOLCI005577300
Solanaceae Solanum pennellii 1 gene-LOC107032428
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