Basic Information
Locus ID:
populus_peu31675
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Riboflavin biosynthesis protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 18804985 | 18826699 | + | populus_peu31675 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 85,016.70 Da | 46.60 | 83.55 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 140 | 391 | 1.00635E-91 | - |
| CDD | cd01284 | Riboflavin_deaminase-reductase | 488 | 600 | 4.16317E-53 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 140 | 391 | 4.7E-56 | IPR001245 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 31 | 114 | 6.0E-10 | IPR020683 |
| Pfam | PF00383 | Cytidine and deoxycytidylate deaminase zinc-binding region | 484 | 581 | 5.1E-20 | IPR002125 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 18 | 111 | 2.93E-20 | IPR036770 |
| SUPERFAMILY | SSF53927 | Cytidine deaminase-like | 484 | 623 | 2.61E-45 | IPR016193 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 139 | 430 | 1.03E-70 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 127 | 213 | 3.2E-21 | - |
| Gene3D | G3DSA:3.40.430.10 | Dihydrofolate Reductase, subunit A | 622 | 760 | 8.9E-6 | IPR024072 |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 474 | 621 | 3.9E-46 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 214 | 412 | 2.9E-52 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 9 | 126 | 6.4E-22 | IPR036770 |
| SMART | SM00248 | ANK_2a | 87 | 117 | 1900.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 54 | 83 | 2.0E-5 | IPR002110 |
| TIGRFAM | TIGR00326 | eubact_ribD: riboflavin biosynthesis protein RibD | 488 | 753 | 2.9E-69 | IPR004794 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 54 | 86 | 12.142647 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 54 | 86 | 13.51743 | IPR002110 |
| ProSiteProfiles | PS51747 | Cytidine and deoxycytidylate deaminases domain profile. | 482 | 604 | 24.686924 | IPR002125 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 134 | 398 | 43.353939 | IPR000719 |
| ProSitePatterns | PS00903 | Cytidine and deoxycytidylate deaminases zinc-binding region signature. | 531 | 569 | - | IPR016192 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 140 | 161 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 209 | 222 | 6.4E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 362 | 384 | 6.4E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 317 | 339 | 6.4E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 248 | 266 | 6.4E-12 | IPR001245 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20960.1 | Cytidine/deoxycytidylate deaminase family protein. encodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesis | 0 |
| RefSeq | XP_011023352.1 | PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Populus euphratica] | 0 |
| Q8GWP5 | Riboflavin biosynthesis protein PYRD, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PYRD PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3I8A3 | diaminohydroxyphosphoribosylaminopyrimidine deaminase OS=Corchorus capsularis OX=210143 GN=CCACVL1_14137 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29348 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30010930 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1310.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G14906 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6135, nbisL1-mrna-9505 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016722 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.488 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21756 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-7321, nbisL1-mrna-7322, nbisL1-mrna-7323 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.269 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017523 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19640 |
| Salicaceae | Populus euphratica | 1 | populus_peu31675 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610332 |
| Solanaceae | Solanum chilense | 1 | SOLCI005577300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032428 |