Basic Information
Locus ID:
populus_peu31563
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 17727890 | 17730941 | + | populus_peu31563 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 40,990.77 Da | 50.02 | 92.52 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 317 | 360 | 1.01791E-16 | - |
| Pfam | PF13639 | Ring finger domain | 317 | 360 | 1.7E-13 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 22 | 89 | 1.6E-16 | IPR025287 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 152 | 222 | 6.2E-9 | IPR032872 |
| SUPERFAMILY | SSF57850 | RING/U-box | 317 | 363 | 4.12E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 282 | 365 | 2.0E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 318 | 359 | 1.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 318 | 360 | 12.858103 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011023186.1 | PREDICTED: putative RING-H2 finger protein ATL21A [Populus euphratica] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A8T2ZI17 | RING-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_005050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology