Basic Information
Locus ID:
populus_peu31552
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 17646214 | 17649148 | + | populus_peu31552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 30,668.26 Da | 42.37 | 68.93 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 66 | 97 | 1.21689E-11 | - |
| CDD | cd03829 | Sina | 122 | 250 | 2.03023E-67 | - |
| Pfam | PF03145 | Seven in absentia protein family | 61 | 249 | 4.0E-55 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 106 | 253 | 2.42E-28 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 112 | 249 | 2.9E-39 | IPR008974 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 48 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_011023176.1 | PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Populus euphratica] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A9PEZ7 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_002G171500 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology