Basic Information
Locus ID:
populus_peu31381
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 15628378 | 15631566 | - | populus_peu31381 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 50,819.71 Da | 57.29 | 77.91 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 96 | 417 | 2.6E-88 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 67 | 452 | 7.93E-123 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 59 | 451 | 1.4E-118 | IPR012334 |
| SMART | SM00710 | pbh1 | 231 | 257 | 49.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 258 | 279 | 3100.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 208 | 230 | 3600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 340 | 361 | 1500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 281 | 301 | 6200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 311 | 332 | 4.7 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 288 | 301 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 61 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_011003167.1 | PREDICTED: polygalacturonase At1g48100 isoform X1 [Populus euphratica] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8AEH5 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_008632 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology