Basic Information
Locus ID:
populus_peu31235
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Phytochrome A-associated F-box
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 12519554 | 12522935 | - | populus_peu31235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 37,367.86 Da | 38.08 | 71.54 | -0.39 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02440.1 | F-box family protein. EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta. | 0 |
| RefSeq | XP_011008060.1 | PREDICTED: phytochrome A-associated F-box protein-like [Populus euphratica] | 0 |
| Q8LEA8 | Phytochrome A-associated F-box protein OS=Arabidopsis thaliana OX=3702 GN=EID1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6M2EY69 | F-box domain-containing protein OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35181, jg8895 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5219 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029489 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g163960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1349, Sbi_jg35230 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3380 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003555 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73687, Sgl77619 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007245, gene:ENSEOMG00000036960 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0013330, CQ.Regalona.r1.7BG0015320 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30009120 |
| Apiaceae | Apium graveolens | 2 | Ag2G02535, Ag9G02245 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G010150 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715299, gene-LOC120110215 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.966.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G21446 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G02440.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g02350.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g045070.2N |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g11410, gene.Cymno04g14270 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g03030, gene.Thate06g04000 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6259, nbisL1-mrna-9623 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.349 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024870 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2740, BH05.2856, CH09.2672 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0376140, gene-QOZ80_5BG0423360 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013822 |
| Poaceae | Oryza coarctata | 1 | Oco09G007670 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g30190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G118900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr22G010200 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G386000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG034650, gene_TRIDC1BG040130 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G229800.1.cds1, TraesCS1B02G244300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb346660_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48417 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26710 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.129, evm.TU.LG04.623 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g32380, gene.Posoc02g08180 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.785 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21441 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19989 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18508 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.224 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009536 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17348 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5262 |
| Salicaceae | Populus euphratica | 3 | populus_peu27248, populus_peu27256, populus_peu31235 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608911 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029374 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13291_chr07_- |
| Zosteraceae | Zostera marina | 2 | Zosma06g21560.v3.1, Zosma189g00040.v3.1 |